Ryan Christie put the home side ahead from the spot in the final minute of the first half, but Eran Zahavi's goals after 73 minutes meant Steve Clarke's side had to settle for a point.
It leaves Scotland sitting third in Group M, with the Czech Republic leading the way on three points. It was a difficult evening for many of Clarke's men, but Lyndon Dykes can be satisfied with his debut.
Here's how rated Scotland man-by-man. David Marshall - 6Pulled off a terrific save just seconds before the opener when he reacted brilliantly to Moanes Dabbur’s diving header.
Had no chance with the goal.Scott McKenna - 6The big Dons defender took his club form into the Scotland set-up and he looks like he’s solid again.
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